getGeneExpression

getGeneExpression,Pagoda2-method

getGeneExpression,Conos-method

<p>sample from which to access gene expression</p>

sample

gene

<p>Access gene expression from sample</p>

Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/conos>. The size of the 'conosPanel' package is approximately 12 MB.

Evan Biederstedt

conos

Clustering on Network of Samples

Viktor Petukhov

Nikolas Barkas

Peter Kharchenko

Weiliang Qiu

getGeneExpression function

Access gene expression from sample — getGeneExpression

Access gene expression from sample

getGeneExpression: Access gene expression from sample

Description

Usage

Arguments