getEmbedding

getEmbedding,Pagoda2-method

getEmbedding,seurat-method

getEmbedding,Seurat-method

getEmbedding,Conos-method

Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/conos>. The size of the 'conosPanel' package is approximately 12 MB.

Evan Biederstedt

conos

Clustering on Network of Samples

Viktor Petukhov

Nikolas Barkas

Peter Kharchenko

Weiliang Qiu

getEmbedding function

<dl><dt>sample</dt>
<dd>sample from which to get the embedding</dd>
<dt>type</dt>
<dd>character Type of embedding to get</dd></dl>

Arguments

Access embedding from sample — getEmbedding

<dl>

<dt>sample</dt>
<dd>sample from which to get the embedding</dd>


<dt>type</dt>
<dd>character Type of embedding to get</dd>

</dl>

Access embedding from sample

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getEmbedding: Access embedding from sample

Description

Usage

Arguments