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conos (version 1.5.2)

getPercentGlobalClusters: Evaluate how many clusters are global

Description

Evaluate how many clusters are global

Usage

getPercentGlobalClusters(
  p2list,
  pjc,
  pc.samples.cutoff = 0.9,
  min.cell.count.per.sample = 10
)

Value

percent of clusters that are global given the above criteria

Arguments

p2list

list of pagoda2 object on which clustering was generated

pjc

the result of joint clustering

pc.samples.cutoff

numeric The percent of the number of the total samples that a cluster has to span to be considered global (default=0.9)

min.cell.count.per.sample

numeric The minimum number of cells of cluster in sample to be considered as represented in that sample (default=10)