ContigOrdering

ContigOrdering-class

a matrix of two character vectors that represent the calculated ordering of a linkage group. 
The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries
in the calculated order. 
The second element is the names of names of each contig in the calculated order.

ordering

This class is a matrix of two character vectors that represent the calculated ordering of a linkage group. 
 The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries
 in the calculated order. 
 The second element is the names of names of each contig in the calculated order.<p></p><p>Constructor for ContigOrdering</p>

Using strand inheritance data from multiple single cells
        from the organism whose genome is to be assembled, contiBAIT
        can cluster unbridged contigs together into putative
        chromosomes, and order the contigs within those chromosomes.

Kieran ONeill

contiBAIT

Improves Early Build Genome Assemblies using Strand-Seq Data

ContigOrdering-class function

This class is a matrix of two character vectors that represent the calculated ordering of a linkage group. 
 The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries
 in the calculated order. 
 The second element is the names of names of each contig in the calculated order.

Constructor for ContigOrdering

ContigOrdering-class: A class for storing contig ordering of a linkage group

Description

Usage

Arguments

Value

Examples