StrandStateMatrix

StrandStateMatrix-class

an integer matrix of strand states by library

states

The strand information stored in this object is a call of the strand state
 of each contig in each library.
 mapping to each contig in each library (cell). This should fall within the range (-1,1).
This class simply extends matrix, but with additional validity checking.<p></p><p>Constructor for StrandStateMatrix</p>

Using strand inheritance data from multiple single cells
        from the organism whose genome is to be assembled, contiBAIT
        can cluster unbridged contigs together into putative
        chromosomes, and order the contigs within those chromosomes.

Kieran ONeill

contiBAIT

Improves Early Build Genome Assemblies using Strand-Seq Data

StrandStateMatrix-class function

The strand information stored in this object is a call of the strand state
 of each contig in each library.
 mapping to each contig in each library (cell). This should fall within the range (-1,1).
This class simply extends matrix, but with additional validity checking.

Constructor for StrandStateMatrix

StrandStateMatrix-class: A class for storing a data frame of discrete strand states of a set of contigs over several libraries

Description

Usage

Arguments

Value

Examples