contiBAIT (version 1.0.0)

makeBoxPlot,ChrTable,LinkageGroupList-method: makeBoxPlot -- creates boxplot of contigs included in the analysis vs those excluded

Description

makeBoxPlot -- creates boxplot of contigs included in the analysis vs those excluded

Usage

## S3 method for class 'ChrTable,LinkageGroupList':
makeBoxPlot(chrTable, linkage.contigs)

Arguments

chrTable

A GRanges object consisting of contigs and positions. A meta column called 'names' must be present with names in the same format as those from linkage.contigs. Generated by makeChrTable().

linkage.contigs

A list of clustered contigs, generated by clusterContigs()

Value

• a box plot of included and excluded contigs

Examples

#make an example barplot of data

data("exampleLGList")
data("exampleChrTable")
makeBoxPlot(exampleChrTable, exampleLGList)