contiBAIT (version 1.0.0)

plotContigOrder: Plot ordering of contigs within a single linkage group.

Description

Plot ordering of contigs within a single linkage group.

Usage

plotContigOrder(contigOrder, lg)

Arguments

contigOrder

matrix from orderAllContigs with the subdivided linkage groups and the names of the contigs to plot

lg

Integer specifying the linkage group by which to plot

Value

• A ggplot object (which will be plotted automatically if not assigned).

Examples

#Get a data.frame of ordered contigs from cells from the same organism, aligned to the same genome
 
data("exampleLGList")
data("exampleWCMatrix")
data("exampleStrandFreq")
data("exampleReadCounts")
contigOrder <- orderAllLinkageGroups(exampleLGList, 
								     exampleWCMatrix, 
								     exampleStrandFreq, 
								     exampleReadCounts)
plotContigOrder(contigOrder)