.get.httr_config

<code class="command">.get.httr_config()</code> retrieves the current CURL options and in particular tests and gets
the options used with "^https://.*ensembl.org" URLs. The code was partly copied from <code>listMarts()</code>.

internal

Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but
that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function
in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the
'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes"
can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol()
attempts to determine the most likely current Gene Symbol.

Vidal Fey

convertid

Convert Gene IDs Between Each Other and Fetch Annotations from
Biomart

Henrik Edgren

.get.httr_config function

<dl><dt>httr_config</dt>
<dd>(<code>list</code>). A R object of class <code>request</code> listing current CURL options. Missing (and meant to be created) by default.</dd>
<dt>host</dt>
<dd>(<code>character</code>) Host URL.</dd>
<dt>use.cache</dt>
<dd>(<code>logical</code>) Should <code>biomaRt</code> functions use the cache? Defaults to <code>TRUE</code>.</dd></dl>

Arguments

<code class='command'>.get.httr_config()</code> retrieves the current CURL options and in particular tests and gets
the options used with "^https://.*ensembl.org" URLs. The code was partly copied from <code>listMarts()</code>.

Unexported functions
Get httr configuration, i.e., current CURL options for data fetching functions. — .get.httr_config

<dl>

<dt>httr_config</dt>
<dd>(<code>list</code>). A R object of class <code>request</code> listing current CURL options. Missing (and meant to be created) by default.</dd>


<dt>host</dt>
<dd>(<code>character</code>) Host URL.</dd>


<dt>use.cache</dt>
<dd>(<code>logical</code>) Should <code>biomaRt</code> functions use the cache? Defaults to <code>TRUE</code>.</dd>

</dl>

.get.httr_config: Unexported functions Get httr configuration, i.e., current CURL options for data fetching functions.

Description

Usage

Value

Arguments

See Also

Examples