convertId2

<code class="command">convertId2()</code> uses the Bimap interface in AnnotationDbi to extract information from
 annotation packages. The function is limited to Human and Mouse annotations and is provided only as
 fallback mechanism for the most common use cases in data analysis. Please use the Biomart interface
 function <code>convert.bm()</code> for more flexibility.

Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but
that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function
in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the
'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes"
can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol()
attempts to determine the most likely current Gene Symbol.

Vidal Fey

convertid

Convert Gene IDs Between Each Other and Fetch Annotations from
Biomart

Henrik Edgren

convertId2 function

<dl><dt>id</dt>
<dd>(<code>character</code>). Vector of gene symbols.</dd>
<dt>species</dt>
<dd>(<code>character</code>). One of "Human" and "Mouse". Defaults to "Human".</dd></dl>

Arguments

<code class='command'>convertId2()</code> uses the Bimap interface in AnnotationDbi to extract information from
 annotation packages. The function is limited to Human and Mouse annotations and is provided only as
 fallback mechanism for the most common use cases in data analysis. Please use the Biomart interface
 function <code>convert.bm()</code> for more flexibility.

Convert Gene Symbols to Ensembl Gene IDs or vice versa — convertId2

<dl>

<dt>id</dt>
<dd>(<code>character</code>). Vector of gene symbols.</dd>


<dt>species</dt>
<dd>(<code>character</code>). One of "Human" and "Mouse". Defaults to "Human".</dd>

</dl>

convertId2: Convert Gene Symbols to Ensembl Gene IDs or vice versa

Description

Usage

Value

Arguments

See Also

Examples