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convevol (version 1.0)
Quantifies and assesses the significance of convergent evolution
Description
Quantifies and assesses the significance of convergent evolution.
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2.0.1
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Install
install.packages('convevol')
Monthly Downloads
314
Version
1.0
License
GPL-2
Maintainer
C Tristan Stayton
Last Published
December 22nd, 2014
Functions in convevol (1.0)
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convnum
Quantify convergence by the number of convergent events
convratsig
Tests the signifiance of convergent evolution by the ratio of the current to maximum past phenotypic distance
maxdist
Calculates the maximum phenotypic distance between the lineages leading to a pair of taxa.
convrat
Quantify convergence by the ratio of the current to maximum past phenotypic distance
convnumsig
Assess the significance of convergent evolution using simulations and the convnum metric
labelstonumbers
Converts taxon names to tip/edge numbers
multianc
Reconstructs ancestral states for multiple characters
plotellipse
Plots an ellipse
allmaxdist
Calculates maxdist for all pairs of taxa in a phylogeny.
calcchanges
Calculates all phenotypic changes that occur on all branches of a phylogeny.
findanc
Find the ancestor of a given node in a phylogeny