labelstonumbers: Converts taxon names to tip/edge numbers
Description
Converts taxon names to corresponding tip/edge numbers in the phylogeny.
Usage
labelstonumbers(phyl, tips)
Value
The numbers of all of the tips of interest.
Arguments
phyl
The phylogeny of interest in phylo format
tips
The names of the tips in question
Details
Simply reads in taxon names, determines which tip or edge number they correspond to, and returns those values
References
Paradis, E., J. Claude, and K. Strimmer (2004) APE: Analyses of phylogenetics
and evolution in R langauge. Bioinformatics, 20, 289-290.
Paradis, E. (2012) Analysis of Phylogenetics and Evolution with R (Second Edition). New York: Springer.