cophe.prepare.dat.susie

Prepare data for <code>cophe.susie</code>

internal

A Bayesian method for Phenome-wide association studies (PheWAS) that identifies causal associations between genetic variants and traits, while simultaneously addressing confounding due to linkage disequilibrium. For details see
Manipur et al (2024, Nature Communications) <doi:10.1038/s41467-024-49990-8>.

Ichcha Manipur

cophescan

Adaptation of the Coloc Method for PheWAS

Chris Wallace

cophe.prepare.dat.susie function

<dl><dt>dataset</dt>
<dd>a list with specifically named elements defining the query trait dataset
to be analysed.</dd>
<dt>querysnpid</dt>
<dd>Id of the query variant, (id in dataset$snp)</dd>
<dt>susie.args</dt>
<dd>a named list of additional arguments to be passed to
runsusie</dd></dl>

Arguments

Prepare data for cophe.susie — cophe.prepare.dat.susie

<dl>

<dt>dataset</dt>
<dd>a list with specifically named elements defining the query trait dataset
to be analysed.</dd>


<dt>querysnpid</dt>
<dd>Id of the query variant, (id in dataset$snp)</dd>


<dt>susie.args</dt>
<dd>a named list of additional arguments to be passed to
runsusie</dd>

</dl>

cophe.prepare.dat.susie: Prepare data for `cophe.susie`

Description

Usage

Value

Arguments

See Also