get_beta

Extract beta and p-values of queried variant

A Bayesian method for Phenome-wide association studies (PheWAS) that identifies causal associations between genetic variants and traits, while simultaneously addressing confounding due to linkage disequilibrium. For details see
Manipur et al (2024, Nature Communications) <doi:10.1038/s41467-024-49990-8>.

Ichcha Manipur

cophescan

Adaptation of the Coloc Method for PheWAS

Chris Wallace

get_beta function

<dl><dt>traits.dat</dt>
<dd>list of coloc structured dataset</dd>
<dt>querysnpid</dt>
<dd>vector of querysnpid</dd>
<dt>querytrait</dt>
<dd>vector of querytrait names</dd></dl>

Arguments

Extract beta and p-values of queried variant — get_beta

<dl>

<dt>traits.dat</dt>
<dd>list of coloc structured dataset</dd>


<dt>querysnpid</dt>
<dd>vector of querysnpid</dd>


<dt>querytrait</dt>
<dd>vector of querytrait names</dd>

</dl>

get_beta: Extract beta and p-values of queried variant

Description

Usage

Value

Arguments