multitrait.simplify

Simplifying the output obtained from <code>cophe.multitrait</code>, <code>cophe.single</code> or <code>cophe.susie</code>

A Bayesian method for Phenome-wide association studies (PheWAS) that identifies causal associations between genetic variants and traits, while simultaneously addressing confounding due to linkage disequilibrium. For details see
Manipur et al (2024, Nature Communications) <doi:10.1038/s41467-024-49990-8>.

Ichcha Manipur

cophescan

Adaptation of the Coloc Method for PheWAS

Chris Wallace

multitrait.simplify function

<dl><dt>multi.dat</dt>
<dd>output obtained from <code>cophe.multitrait</code>, <code>cophe.single</code> or <code>cophe.susie</code></dd>
<dt>only_BF</dt>
<dd>return only bayes factors and not posterior probabilities (default=FALSE)</dd></dl>

Arguments

Simplifying the output obtained from cophe.multitrait, cophe.single or cophe.susie — multitrait.simplify

<dl>

<dt>multi.dat</dt>
<dd>output obtained from <code>cophe.multitrait</code>, <code>cophe.single</code> or <code>cophe.susie</code></dd>


<dt>only_BF</dt>
<dd>return only bayes factors and not posterior probabilities (default=FALSE)</dd>

</dl>

multitrait.simplify: Simplifying the output obtained from `cophe.multitrait`, `cophe.single` or `cophe.susie`

Description

Usage

Value

Arguments