plot.seqre_result

Performs Bayesian nonparametric density estimation using Martingale
posterior distributions including the Copula Resampling (CopRe) algorithm.
Also included are a Gibbs sampler for the marginal Gibbs-type mixture model and
an extension to include full uncertainty quantification via a predictive
sequence resampling (SeqRe) algorithm. The CopRe and SeqRe samplers generate
random nonparametric distributions as output, leading to complete nonparametric
inference on posterior summaries. Routines for calculating arbitrary
functionals from the sampled distributions are included as well as an important
algorithm for finding the number and location of modes, which can then be used
to estimate the clusters in the data using, for example, k-means.
Implements work developed in Moya B., Walker S. G. (2022).
<doi:10.48550/arxiv.2206.08418>, Fong, E., Holmes, C., Walker, S. G. (2021)
<doi:10.48550/arxiv.2103.15671>, and Escobar M. D., West, M. (1995)
<doi:10.1080/01621459.1995.10476550>.

Blake Moya

copre

Tools for Nonparametric Martingale Posterior Sampling

The University of Texas at Austin 

plot.seqre_result function

<dl><dt>x</dt>
<dd>A <code>seqre_result</code> object.</dd>
<dt>...</dt>
<dd>Additional arguments discarded from <code>plot</code>.</dd>
<dt>func</dt>
<dd>Either 'distribution', 'density', or 'gradient'.</dd>
<dt>confint</dt>
<dd>A decimal value indicating the confidence interval width (e.g.
0.95 for a 95% confidence interval). Defaults to <code>NULL</code>, in which case no
confidence intervals will be drawn.</dd>
<dt>use_ggplot</dt>
<dd>A logical value indicating whether to use <code>ggplot2</code> instead
of the base <code>plot</code> function.</dd></dl>

Arguments

Create a SeqRe Result Plot — plot.seqre_result

<dl>

<dt>x</dt>
<dd>A <code>seqre_result</code> object.</dd>


<dt>...</dt>
<dd>Additional arguments discarded from <code>plot</code>.</dd>


<dt>func</dt>
<dd>Either 'distribution', 'density', or 'gradient'.</dd>


<dt>confint</dt>
<dd>A decimal value indicating the confidence interval width (e.g.
0.95 for a 95% confidence interval). Defaults to <code>NULL</code>, in which case no
confidence intervals will be drawn.</dd>


<dt>use_ggplot</dt>
<dd>A logical value indicating whether to use <code>ggplot2</code> instead
of the base <code>plot</code> function.</dd>

</dl>

plot.seqre_result: Create a SeqRe Result Plot

Description

Usage

Value

Arguments