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corHMM (version 1.22)

Analysis of Binary Character Evolution

Description

Fits a hidden rates model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as hidden states in a Markov process and various other functions for evaluating models of binary character evolution.

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Version

Install

install.packages('corHMM')

Monthly Downloads

592

Version

1.22

License

GPL (>= 2)

Maintainer

Jeremy Beaulieu

Last Published

July 19th, 2017

Functions in corHMM (1.22)

plotRECON

Plot ancestral state reconstructions
examples

Example datasets
corDISC

Correlated evolution binary traits
corHMM

Hidden Rates Model
ConvertPhangornReconstructions

Convert phangorn reconstruction to a vector
ancRECON

Ancestral state reconstruction
readNexusMorph

Reads morphological character data In NEXUS Format
corPAINT

Binary character evolution with tree painting
lewisMkv

Phylogenetic inference of morphology using mkv model
rate.mat.maker

Rate matrix maker
rayDISC

Evolution of categorical traits