computeAdjustedSelectionUsingRecomputeMethod

The function <code>computeAdjustedSelectionUsingRecomputeMethod</code> is used internally by
the <code>CoreCollection</code> object to compute an adjusted selection using the recompute
method.

internal

Create a custom sized Core Collection based on a distance matrix and applying
the A-NE (accession nearest entry), E-NE (entry nearest entry) or E-E (entry entry) method
as introduced in Jansen and van Hintum (2007) <doi:10.1007/s00122-006-0433-9> and
further elaborated on in Odong, T.L. (2012) <https://edepot.wur.nl/212422>.
Optionally a list of preselected accessions to be included into the core can be set.
For each accession in the computed core, if available nearby accessions are retrievable
that can be used as an alternative.

Matthijs Brouwer

coreCollection

Core Collection

Reinhoud Blok, de

computeAdjustedSelectionUsingRecomputeMethod function

<dl><dt>dist</dt>
<dd>distance matrix, used for distances and implicitly defining the set of entries</dd>
<dt>adjustedSelected</dt>
<dd>the selected entries defined as a list of zero-based integers referring to the row/columns of <code>dist</code></dd></dl>

Arguments

Compute selection - recompute method — computeAdjustedSelectionUsingRecomputeMethod

<dl>

<dt>dist</dt>
<dd>distance matrix, used for distances and implicitly defining the set of entries</dd>


<dt>adjustedSelected</dt>
<dd>the selected entries defined as a list of zero-based integers referring to the row/columns of <code>dist</code></dd>

</dl>

computeAdjustedSelectionUsingRecomputeMethod: Compute selection - recompute method

Description

Usage

Arguments

Details