evaluateCore

A core collection of class <code>chcore</code>, or a
numeric or character vector indicating the indices or ids,
respectively, of the individuals in the evaluated core.

core

Core Hunter data (<code>chdata</code>) containing genotypes,
phenotypes and/or a precomputed distance matrix. Can also be an
object of class <code>chdist</code>, <code>chgeno</code> or <code>chpheno</code>
if only one type of data is provided.

data

Objective function (<code>chobj</code>) used to evaluate the core.

objective


Evaluate a core collection using the specified objective.


Core Hunter is a tool to sample diverse, representative subsets from large germplasm
collections, with minimum redundancy. Such so-called core collections have applications in plant
breeding and genetic resource management in general. Core Hunter can construct cores based on
genetic marker data, phenotypic traits or precomputed distance matrices, optimizing one of many
provided evaluation measures depending on the precise purpose of the core (e.g. high diversity,
representativeness, or allelic richness). In addition, multiple measures can be simultaneously
optimized as part of a weighted index to bring the different perspectives closer together.
The Core Hunter library is implemented in Java 8 as an open source project (see
<http://www.corehunter.org>).

evaluateCore: Evaluate a core collection using the specified objective.

Description

Usage

Arguments

Value

See Also

Examples