exampleData


Includes a precomputed distance matrix read from <code>"extdata/distances.csv"</code>,
genotypes read from <code>"extdata/genotypes.csv"</code> and phenotypes read from
<code>"extdata/phenotypes.csv"</code>.


Core Hunter is a tool to sample diverse, representative subsets from large germplasm
collections, with minimum redundancy. Such so-called core collections have applications in plant
breeding and genetic resource management in general. Core Hunter can construct cores based on
genetic marker data, phenotypic traits or precomputed distance matrices, optimizing one of many
provided evaluation measures depending on the precise purpose of the core (e.g. high diversity,
representativeness, or allelic richness). In addition, multiple measures can be simultaneously
optimized as part of a weighted index to bring the different perspectives closer together.
The Core Hunter library is implemented in Java 8 as an open source project (see
<http://www.corehunter.org>).

Herman De Beukelaer

corehunter

Multi-Purpose Core Subset Selection

exampleData function

Cerón-Rojas, J. Jesús ; Crossa, José; Arief, Vivi N.; Kaye Basford;
        Rutkoski, Jessica; Jarquín, Diego ; Alvarado, Gregorio; Beyene, Yoseph;
        Semagn, Kassa ; DeLacy, Ian, 2015-06-04, "Application of a Genomics
        Selection Index to Real and Simulated Data", <a href="http://hdl.handle.net/11529/10199">http://hdl.handle.net/11529/10199</a> V10

Source

Cerón-Rojas, J. Jesús ; Crossa, José; Arief, Vivi N.; Kaye Basford;
        Rutkoski, Jessica; Jarquín, Diego ; Alvarado, Gregorio; Beyene, Yoseph;
        Semagn, Kassa ; DeLacy, Ian, 2015-06-04, "Application of a Genomics
        Selection Index to Real and Simulated Data", <a href = 'http://hdl.handle.net/11529/10199'>http://hdl.handle.net/11529/10199</a> V10

exampleData: Example dataset with 218 individuals.

Description

Usage

Arguments

Value

Source

Details