credsetmat

Matrix of posterior probabilities (one row for each simulation)

The threshold to use to generate the credible set

threshold

Obtain credible sets from a matrix of posterior probabilities

Using a computationally efficient method, the package can
be used to find the corrected coverage estimate of a credible set
of putative causal variants from Bayesian genetic fine-mapping.
The package can also be used to obtain a corrected credible set
if required; that is, the smallest set of variants required such
that the corrected coverage estimate of the resultant credible set is
within some user defined accuracy of the desired coverage.
Maller et al. (2012) <doi:10.1038/ng.2435>,
Wakefield (2009) <doi:10.1002/gepi.20359>,
Fortune and Wallace (2018) <doi:10.1093/bioinformatics/bty898>.

Anna Hutchinson

credsetmat: Obtain credible sets from a matrix of posterior probabilities

Description

Usage

Arguments