matrixCorr-class

The S4 class matrixCorr lists raw, unfiltered Q matrices between Structure runs

structure

Q matrix

Qmatrix

matrixCorr

Statistical summary of STRUCTURE output. STRUCTURE is a K-means clustering method for inferring population structure and assigning individuals to populations using genetic data. Pritchard JK, Stephens M, Donnelly PJ (2000) <DOI:10.1093/genetics/155.2.945>. <https://web.stanford.edu/group/pritchardlab/structure.html>.

Michael Campana

corrsieve

Software for Summarising and Evaluating STRUCTURE Output

matrixCorr function

Objects can be created by calls of the form <code>new("matrixCorr", ...)</code>.

Objects from the Class

<dl class="dl-horizontal">
	<dt>K</dt><dd>A numeric listing the K value of the runs correlated</dd>
	<dt>Run1</dt><dd>A numeric identifying the first of the runs correlated</dd>
	<dt>Run2</dt><dd>A numeric identifying the second of the runs correlated</dd>
	<dt>CorrMatrix</dt><dd>A matrix listing raw Q matrix correlations</dd>
	<dt>Pvalues</dt><dd>A matrix listing raw Q matrix correlation significances</dd>
</dl>

Slots

MatrixCorr — matrixCorr

<dl class='dl-horizontal'>
	<dt>K</dt><dd>A numeric listing the K value of the runs correlated</dd>
	<dt>Run1</dt><dd>A numeric identifying the first of the runs correlated</dd>
	<dt>Run2</dt><dd>A numeric identifying the second of the runs correlated</dd>
	<dt>CorrMatrix</dt><dd>A matrix listing raw Q matrix correlations</dd>
	<dt>Pvalues</dt><dd>A matrix listing raw Q matrix correlation significances</dd>
</dl>

matrixCorr: MatrixCorr

Description

Arguments

Objects from the Class

Slots

See Also