COSMIC_v3.0

Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In
Cancer (v3.0 - May 2019)

datasets

A data package with 2 main package variables: 'signature' and 'etiology'.
The 'signature' variable contains the latest mutational signature profiles
released on COSMIC <https://cancer.sanger.ac.uk/signatures/> for 3 mutation
types:
* Single base substitutions in the context of preceding and following bases,
* Doublet base substitutions, and
* Small insertions and deletions.
The 'etiology' variable provides the known or hypothesized causes of signatures.
'cosmicsig' stands for COSMIC signatures. Please run ?'cosmicsig' for more
information.

Steven Rozen

cosmicsig

Mutational Signatures from COSMIC (Catalogue of Somatic
Mutations in Cancer)

Nanhai Jiang

COSMIC_v3.0 function

A list with one element <code>signature</code>, with the
same structure as <code>signature</code>, except that
sub-element GRCh37 does contain <code>SBS192</code>.

Format

The signatures are all genome signatures. See CatalogRowOrder
in package ICAMS for the classification of mutation types.

Remark

Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In
Cancer (v3.0 - May 2019) — COSMIC_v3.0

The signatures are all genome signatures. See CatalogRowOrder
in package ICAMS for the classification of mutation types.

COSMIC_v3.0: Mutational signatures data from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.0 - May 2019)

Description

Usage

Arguments

Format

Remark

Examples