etiology

List of mutational signatures's proposed etiology summarized from COSMIC,
Catalogue Of Somatic Mutations In Cancer (v3.3 - June 2022)

datasets

A data package with 2 main package variables: 'signature' and 'etiology'.
The 'signature' variable contains the latest mutational signature profiles
released on COSMIC <https://cancer.sanger.ac.uk/signatures/> for 3 mutation
types:
* Single base substitutions in the context of preceding and following bases,
* Doublet base substitutions, and
* Small insertions and deletions.
The 'etiology' variable provides the known or hypothesized causes of signatures.
'cosmicsig' stands for COSMIC signatures. Please run ?'cosmicsig' for more
information.

Steven Rozen

cosmicsig

Mutational Signatures from COSMIC (Catalogue of Somatic
Mutations in Cancer)

Nanhai Jiang

etiology function

A list with the elements:<ul>
<li>SBS96</li>
<li>DBS78</li>
<li>ID</li>
</ul>Each element is a single-column matrix with rownames being the signature
IDs and values being a short string describing the proposed
etiology.
In general use <code>get_etiology</code>, which handles new
signatures do not have an element in <code>etiology</code>.

Format

List of mutational signatures's proposed etiology summarized from COSMIC,
Catalogue Of Somatic Mutations In Cancer (v3.3 - June 2022) — etiology

A list with the elements:<ul>
<li>SBS96</li>
<li>DBS78</li>
<li>ID</li>
</ul>

Each element is a single-column matrix with rownames being the signature
IDs and values being a short string describing the proposed
etiology.
In general use <code>get_etiology</code>, which handles new
signatures do not have an element in <code>etiology</code>.

etiology: List of mutational signatures's proposed etiology summarized from COSMIC, Catalogue Of Somatic Mutations In Cancer (v3.3 - June 2022)

Description

Usage

Arguments

Format

Examples