countTransformers (version 0.0.6)

Transform Counts in RNA-Seq Data Analysis

Description

Provide data transformation functions to transform counts in RNA-seq data analysis. Please see the reference: Zhang Z, Yu D, Seo M, Hersh CP, Weiss ST, Qiu W. (2019) .

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Install

install.packages('countTransformers')

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Version

0.0.6

License

GPL (>= 2)

Maintainer

Zeyu Zhang

Last Published

March 20th, 2019

Functions in countTransformers (0.0.6)

r2Transformer

Root Based Count Transformation Minimizing Sum of Sample-Specific Squared Difference

wilcoxWrapper

Wrapper Function for Wilcoxon Rank Sum Test

rvTransformer

Root and VOOM Transformation

lv2Transformer

Log and VOOM Based Count Transformation Minimizing Sum of Sample-Specific Squared Difference

lvTransformer

Log and VOOM Transformation

l2Transformer

Log Based Count Transformation Minimizing Sum of Sample-Specific Squared Difference

lTransformer

Log-based transformation

rv2Transformer

Root and VOOM Based Count Transformation Minimizing Sum of Sample-Specific Squared Difference

rTransformer

Root Based Transformation

A Simulated Data Set

getJaccard

Calculate Jaccard Index for Two Binary Vectors