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countfitteR

countfitteR is a web server based on Shiny technology for selecting the most appropriate count distribution in provided data sets. The functions of countfitteR can also be accessed via the R console for coustomized analysis pipelines.

Installation

countfitteR is available on CRAN.

install.packages("countfitteR")

However, you can also install the developmental version of countfitteR directly from GitHub

devtools::install_github("BioGenies/countfitteR")

Run countfitteR

To run countfitteR type the following command into an R console.

countfitteR::countfitteR_gui()

How to cite

Chilimoniuk J, Gosiewska A, Słowik J, Weiss R, Deckert PM, Roediger S and Burdukiewicz M (2020). countfitteR: comprehensive automatized evaluation of distribution models for count data. R package version 1.4. https://cran.r-project.org/package=countfitteR.

@Manual{,
  author = {Jaroslaw Chilimoniuk and Alicja Gosiewska and Jadwiga Słowik and Romano Weiss and P. Markus Deckert and Stefan Roediger and Michal Burdukiewicz},
  title = {countfitteR: comprehensive automatized evaluation of distribution models for count data},
  year = {2020},
  note = {R package version 1.4},
  url = {https://CRAN.R-project.org/package=countfitteR},
}

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Version

Install

install.packages('countfitteR')

Monthly Downloads

234

Version

1.4

License

GPL-3

Issues

Pull Requests

Stars

Forks

Maintainer

Jaroslaw Chilimoniuk

Last Published

September 30th, 2020

Functions in countfitteR (1.4)

sim_dat

Data created from simulation of NB Poiss
zinb

Zero-inflated negative binomial distrbution
validate_counts

Validate data
case_study_all

Case study with two fluorescent dyes
zip

Zero-inflated Poisson distrbution
summary_fitlist

Summary of estimates
select_model

Select the most appropriate model
process_counts

Process counts
case_study_FITC

Case study for FITC dye
compare_fit

Compare fits
countfitteR-package

countfitteR - a framework for fitting count distributions in R
fit_counts

Fit counts to distributions
plot_fitcmp

plot_fitcmp
decide

Make a decision based on the BIC value
countfitteR_gui

countfitteR Graphical User Interface
case_study

Short version of the case_study_FITC
case_study_APC

Case study for APC dye