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coxme (version 2.2-14)

Mixed Effects Cox Models

Description

This package fits Cox proportional hazards models containing both fixed and random effects. The random effects can have a general form, of which familial interactions (a "kinship" matrix) is a particular special case. Note that the simplest case of a mixed effects Cox model, i.e. a single random per-group intercept, is also called a "frailty" model. The approach is based on Rippatti and Palgren, Biometrics 2002.

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Version

Install

install.packages('coxme')

Monthly Downloads

8,878

Version

2.2-14

License

LGPL-2

Maintainer

Terry Therneau

Last Published

July 4th, 2019

Functions in coxme (2.2-14)

print.lmekin

Print function for lmekin
lmekin.object

lmekin object
coxme.control

Auxillary parameters for controlling coxme fits.
logLik.coxme

The logLik method for coxme objects
print.coxme

Print method for a coxme fit.
predict.coxme

Predictions for a coxme object.
lmekin

Fit a linear mixed effects model
lmekin.control

Auxillary parameters for controlling lmekin fits.
fixef.lmekin

Extraction functions for Lmekin
fixef.coxme

Extraction functions for Coxme
ranef

Import from package nlme
coxme

Fit a mixed effects Cox model
coxmeFull

Variance family function for coxme fits.
coxmeMlist

Coxme variance function
VarCorr

Import from package nlme
expand.nested

Expand nested factors
eortc

Simulated data set based on an EORTC trial
coxme.object

Coxme regression output object
anova.coxme

Analysis of Deviance for a Cox model.
fixed.effects

Import from package nlme