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coxme (version 2.2-20)

Mixed Effects Cox Models

Description

Fit Cox proportional hazards models containing both fixed and random effects. The random effects can have a general form, of which familial interactions (a "kinship" matrix) is a particular special case. Note that the simplest case of a mixed effects Cox model, i.e. a single random per-group intercept, is also called a "frailty" model. The approach is based on Ripatti and Palmgren, Biometrics 2002.

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Version

Install

install.packages('coxme')

Monthly Downloads

14,029

Version

2.2-20

License

LGPL-2

Maintainer

Terry Therneau

Last Published

March 5th, 2024

Functions in coxme (2.2-20)

ranef

Import from package nlme
summary.coxme

Summary method for coxme objects
coxme.object

Coxme regression output object
fixed.effects

Import from package nlme
VarCorr

Import from package nlme
coxme.control

Auxillary parameters for controlling coxme fits.
coxmeMlist

Coxme variance function
coxme

Fit a mixed effects Cox model
expand.nested

Expand nested factors
eortc

Simulated data set based on an EORTC trial
anova.coxme

Analysis of Deviance for a Cox model.
coxmeFull

Variance family function for coxme fits.
lmekin.object

lmekin object
print.coxme

Print method for a coxme fit.
lmekin

Fit a linear mixed effects model
lmekin.control

Auxillary parameters for controlling lmekin fits.
logLik.coxme

The logLik method for coxme objects
fixef.coxme

Extraction functions for Coxme
predict.coxme

Predictions for a coxme object.
fixef.lmekin

Extraction functions for Lmekin
print.lmekin

Print function for lmekin