cpam-package

Provides a comprehensive framework for time series omics analysis, integrating changepoint detection, smooth and shape-constrained trends, and uncertainty quantification. It supports gene- and transcript-level inferences, p-value aggregation for improved power, and both case-only and case-control designs. It includes an interactive 'shiny' interface. The methods are described in Yates et al. (2024) tools:::Rd_expr_doi("10.1101/2024.12.22.630003").

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Provides a comprehensive framework for time series omics analysis,
integrating changepoint detection, smooth and shape-constrained trends,
and uncertainty quantification. It supports gene- and transcript-level inferences,
p-value aggregation for improved power, and both case-only and case-control designs.
It includes an interactive 'shiny' interface. The methods are described in Yates et al. (2024) <doi:10.1101/2024.12.22.630003>.

Luke Yates

cpam

Changepoint Additive Models for Time Series Omics Data

Michael Charleston

Jazmine Humphreys

Steven Smith

cpam-package function

Maintainer: Luke Yates <a href="/link/luke.yates%40utas.edu.au?package=cpam&version=0.1.3" data-mini-rdoc="cpam::luke.yates@utas.edu.au">luke.yates@utas.edu.au</a> (<a href="https://orcid.org/0000-0002-1685-3169">ORCID</a>) [copyright holder]
Authors:<ul>
<li>Michael Charleston</li>
<li>Jazmine Humphreys</li>
<li>Steven Smith</li>
</ul>

Author

cpam: Changepoint Additive Models for Time Series Omics Data — cpam-package

Maintainer: Luke Yates <a href='mailto:luke.yates@utas.edu.au'>luke.yates@utas.edu.au</a> (<a href='https://orcid.org/0000-0002-1685-3169'>ORCID</a>) [copyright holder]
Authors:<ul>
<li>Michael Charleston</li>
<li>Jazmine Humphreys</li>
<li>Steven Smith</li>
</ul>

cpam-package: cpam: Changepoint Additive Models for Time Series Omics Data

Description

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Author

See Also