Usage
assocPvalBySetPlot(pvals, set, title = "", geneSetColor = "red", xlab = expression(-log[10]~p-value), ylab = "Density", xlim = NULL, ylim = NULL, ...)
Arguments
pvals
A numerical vector of p-values with names
corresponding to elements listed in the geneIds slot in the
set object.
set
An object of class GeneSet where geneIds holds
the items of each set corresponding to the pvals.
title
A character string containing the title of the plot.
Default is "", a blank title.
geneSetColor
A character vector holding the color the
highlighted SNPs in the set object should be. Default is
red.
xlab
A character vector with the label for the x-axis on
the plot. Default is -log10(PValue).
ylab
A character vector holding the label for the y-axis
on the plot. Default is Density.
xlim
A vector of two numeric values with the limits of
plotting on the x-axis. By default, the range of the x-axis
values will be determined from the data.
ylim
A vector with two numeric values used as limits for
plotting on the y-axis. By default, the range of the y-axis values
will be determined from the data.
...
Further arguments to be passed to the plotting methods,
such as graphical parameters.