degreesOfFreedom-methods: Methods for Function `degreesOfFreedom`

Description

This function returns the degrees of freedom used to calculate p-values from the corresponding GeneSet or a list of degrees of freedom for a GeneSetCollection.

Usage

degreesOfFreedom(object)

Arguments

object

An object of type GeneSetResult, VEGASResult, GLOSSIResult, GeneSetResultCollection, VEGASResultCollection, or GLOSSIResultCollection

Methods

signature(object = "GeneSetResult"): Returns the degrees of freedom for a GeneSetResult object
signature(object = "VEGASResult"): Returns the degrees of freedom for a VEGASResult object
signature(object = "GLOSSIResult"): Returns the degrees of freedom for a GLOSSIResult object
signature(object = "GeneSetResultCollection"): Returns a list of degrees of freedom for a GeneSetResultCollection objects (1 for each set)
signature(object = "VEGASResultCollection"): Returns a list of degrees of freedom for a VEGASResultCollection objects (1 for each set)
signature(object = "GLOSSIResultCollection"): Returns a list of degrees of freedom for a GLOSSIResultCollection objects (1 for each set)

Value

Returns an integer or a list of integers indicating the degrees of freedom in the corresponding object.

Examples

Run this code

	## Not run: 
# 	degreesOfFreedom( vegas(geneSet, assoc_table, ldMatrix) ) 
# 	## End(Not run)