simulate_chisq

corr_matrix

An integer value for the number of simulations
to be performed.

num_sims


Simulates a value from a chi-squared distribution with a
specified correlation structure.


Gene set analysis methods exist to combine SNP-level
association p-values into gene sets, calculating a single
association p-value for each gene set. This package implements
two such methods that require only the calculated SNP p-values,
the gene set(s) of interest, and a correlation matrix (if
desired). One method (GLOSSI) requires independent SNPs and the
other (VEGAS) can take into account correlation (LD) among the
SNPs. Built-in plotting functions are available to help users
visualize results.

Caitlin McHugh

cpvSNP

Gene set analysis methods for SNP association p-values that lie
in genes in given gene sets

simulate_chisq function

Simulates a value from a chi-squared distribution with a
specified correlation structure.

simulate_chisq: Simulate a Chi-squared Statistic from a Distribution with a Specified Correlation Structure

Description

Usage

Arguments

Value

Details