simulatedStats

simulatedStats-methods

simulatedStats,VEGASResult-method

simulatedStats,VEGASResultCollection-method

An object of type <code>VEGASResult</code> or 
  	<code>VEGASResultCollection</code> 

object


This function returns the simulated statistics for a specified <code>GeneSet</code> 
or a list of simulated statistics for a <code>GeneSetCollection</code>.  


methods

Gene set analysis methods exist to combine SNP-level
association p-values into gene sets, calculating a single
association p-value for each gene set. This package implements
two such methods that require only the calculated SNP p-values,
the gene set(s) of interest, and a correlation matrix (if
desired). One method (GLOSSI) requires independent SNPs and the
other (VEGAS) can take into account correlation (LD) among the
SNPs. Built-in plotting functions are available to help users
visualize results.

Caitlin McHugh

cpvSNP

Gene set analysis methods for SNP association p-values that lie
in genes in given gene sets

simulatedStats-methods function

<dl>
 Defined methods include:
 <dt>
      <code>signature(object = "VEGASResult")</code>
    </dt><dd>
      Returns the simulated statistics for a specified <code>VEGASResult</code> object
    </dd> <dt>
      <code>signature(object = "VEGASResultCollection")</code>
    </dt><dd>
      Returns a list of simulated statistics for a <code>VEGASResultCollection</code> object (1 for each set)
    </dd> </dl> 

Methods

<dl>
  Returns decimal values of simulated statistics from a VEGAS function call or a list of simulated statistics from a VEGAS function call on a gene set collection.
</dl> 

Value

An object of type <code>VEGASResult</code> or 
  	<code>VEGASResultCollection</code>

This function returns the simulated statistics for a specified <code>GeneSet</code> 
or a list of simulated statistics for a <code>GeneSetCollection</code>.

simulatedStats-methods: Methods for Function `simulatedStats`

Description

Usage

Arguments

Methods

Value

See Also

Examples