crlmm (version 1.30.0)

genotypeAffy: Genotype Affymetrix CEL files

Description

Assign diallelic genotypes at polymorphic markers

Usage

genotypeAffy(cnSet, SNRMin = 5, recallMin = 10, recallRegMin = 1000, gender = NULL, badSNP = 0.7, returnParams = TRUE, verbose = TRUE)

Arguments

cnSet

An object of class CNSet

SNRMin

See crlmm

recallMin

See crlmm

recallRegMin

See crlmm

gender

See crlmm

badSNP

See crlmm

returnParams

See crlmm

verbose

Logical.

Value

Returns logical. SNP genotypes and confidence scores are written to ff_matrix objects.

Details

Wrapper for crlmm genotyping.

See Also

crlmm, calls, confs