DataParts-class

.DataParts

DataParts

.DefaultDataParts

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=crmPack&version=2.0.0" alt="[Stable]"></a>
<code>DataParts</code> is a class for the data with two study parts.
It inherits from <code>Data</code> and it contains additional information
on the two study parts.

Implements a wide range of dose escalation
designs. The focus is on model-based designs, ranging from classical and
modern continual reassessment methods (CRMs) based on dose-limiting toxicity
endpoints to dual-endpoint designs taking into account a biomarker/efficacy
outcome. Bayesian inference is performed via MCMC sampling in JAGS, and it is easy
to setup a new design with custom JAGS code. However, it is also possible to
implement 3+3 designs for comparison or models with non-Bayesian estimation.
The whole package is written in a modular form in the S4 class system, making it
very flexible for adaptation to new models, escalation or stopping rules.
Further details are presented in
Sabanes Bove et al. (2019) <doi:10.18637/jss.v089.i10>.

Daniel Sabanes Bove

crmPack

Object-Oriented Implementation of Dose Escalation Designs

Wai Yin Yeung

Burak Kuersad Guenhan

Giuseppe Palermo

Thomas Jaki

Jiawen Zhu

Ziwei Liao

Dimitris Kontos

Marlene Schulte-Goebel

Doug Kelkhoff

Oliver Boix

Robert Adams

Clara Beck

John Kirkpatrick

Wojciech Wójciak

Guanya Peng

Prerana Chandratre

F. Hoffmann-La Roche AG 

Merck Healthcare KGaA 

Bayer AG 

RPACT GmbH 

DataParts-class function

<dl><dt>part</dt>
<dd>(<code>integer</code>) which part does each of the patients belong to?</dd>
<dt>nextPart</dt>
<dd>(<code>count</code>) what is the part for the next cohort (1 or 2)?</dd>
<dt>part1Ladder</dt>
<dd>(<code>numeric</code>) what is the escalation ladder for part 1?
This shall be an ordered subset of the <code>doseGrid</code>.</dd>
<dt>...</dt>
<dd>parameters passed to <code>Data()</code>.</dd></dl>

Arguments

<dl>
<dt><code>part</code></dt>
<dd>(<code>integer</code>) which part does each of the patients belong to?</dd></dl>
<dt><code>nextPart</code></dt>
<dd>(<code>count</code>) what is the part for the next cohort (1 or 2)?</dd>
<dt><code>part1Ladder</code></dt>
<dd>(<code>numeric</code>) what is the escalation ladder for
part 1? This shall be an ordered subset of the <code>doseGrid</code>.</dd>

Slots

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
<code>DataParts</code> is a class for the data with two study parts.
It inherits from <code>Data</code> and it contains additional information
on the two study parts.

DataParts — DataParts-class

<dl>

<dt>part</dt>
<dd>(<code>integer</code>) which part does each of the patients belong to?</dd>


<dt>nextPart</dt>
<dd>(<code>count</code>) what is the part for the next cohort (1 or 2)?</dd>


<dt>part1Ladder</dt>
<dd>(<code>numeric</code>) what is the escalation ladder for part 1?
This shall be an ordered subset of the <code>doseGrid</code>.</dd>


<dt>...</dt>
<dd>parameters passed to <code>Data()</code>.</dd>

</dl>

<dl>
<dt><code>part</code></dt>
<dd>(<code>integer</code>) which part does each of the patients belong to?</dd>


<dt><code>nextPart</code></dt>
<dd>(<code>count</code>) what is the part for the next cohort (1 or 2)?</dd>


<dt><code>part1Ladder</code></dt>
<dd>(<code>numeric</code>) what is the escalation ladder for
part 1? This shall be an ordered subset of the <code>doseGrid</code>.</dd>


</dl>

<code>DataParts</code>

DataParts-class: `DataParts`

Description

Usage

Arguments

Slots

Examples