SimulationsSummary-class

.SimulationsSummary

SimulationsSummary

.DefaultSimulationsSummary

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=crmPack&version=2.0.0" alt="[Stable]"></a>
In addition to the slots in the parent class <code>GeneralSimulationsSummary</code>,
it contains two slots with model fit information.

Implements a wide range of dose escalation
designs. The focus is on model-based designs, ranging from classical and
modern continual reassessment methods (CRMs) based on dose-limiting toxicity
endpoints to dual-endpoint designs taking into account a biomarker/efficacy
outcome. Bayesian inference is performed via MCMC sampling in JAGS, and it is easy
to setup a new design with custom JAGS code. However, it is also possible to
implement 3+3 designs for comparison or models with non-Bayesian estimation.
The whole package is written in a modular form in the S4 class system, making it
very flexible for adaptation to new models, escalation or stopping rules.
Further details are presented in
Sabanes Bove et al. (2019) <doi:10.18637/jss.v089.i10>.

Daniel Sabanes Bove

crmPack

Object-Oriented Implementation of Dose Escalation Designs

Wai Yin Yeung

Burak Kuersad Guenhan

Giuseppe Palermo

Thomas Jaki

Jiawen Zhu

Ziwei Liao

Dimitris Kontos

Marlene Schulte-Goebel

Doug Kelkhoff

Oliver Boix

Robert Adams

Clara Beck

John Kirkpatrick

Wojciech Wójciak

Guanya Peng

Prerana Chandratre

F. Hoffmann-La Roche AG 

Merck Healthcare KGaA 

Bayer AG 

RPACT GmbH 

SimulationsSummary-class function

<dl>
<dt><code>stop_report</code></dt>
<dd>(<code>matrix</code>) matrix of stopping rule outcomes</dd></dl>
<dt><code>fit_at_dose_most_selected</code></dt>
<dd>(<code>numeric</code>) fitted toxicity rate at dose most often selected</dd>
<dt><code>additional_stats</code></dt>
<dd>(<code>list</code>) list of additional statistical summary</dd>
<dt><code>mean_fit</code></dt>
<dd>(<code>list</code>) list with the average, lower (2.5%) and upper (97.5%)
quantiles of the mean fitted toxicity at each dose level</dd>

Slots

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
In addition to the slots in the parent class <code>GeneralSimulationsSummary</code>,
it contains two slots with model fit information.

SimulationsSummary — SimulationsSummary-class

<dl>
<dt><code>stop_report</code></dt>
<dd>(<code>matrix</code>) matrix of stopping rule outcomes</dd>


<dt><code>fit_at_dose_most_selected</code></dt>
<dd>(<code>numeric</code>) fitted toxicity rate at dose most often selected</dd>


<dt><code>additional_stats</code></dt>
<dd>(<code>list</code>) list of additional statistical summary</dd>


<dt><code>mean_fit</code></dt>
<dd>(<code>list</code>) list with the average, lower (2.5%) and upper (97.5%)
quantiles of the mean fitted toxicity at each dose level</dd>


</dl>

<code>SimulationsSummary</code>

SimulationsSummary-class: `SimulationsSummary`

Description

Usage

Arguments

Slots