h_jags_extract_samples

<a href="https://lifecycle.r-lib.org/articles/stages.html#stable"><img src="figures/lifecycle-stable.svg?package=crmPack&version=2.0.0" alt="[Stable]"></a>
A simple helper function that extracts a sample from
<code>rjags::mcarray.object</code> S3 class object. The <code>rjags::mcarray.object</code>
object is used by the <code>rjags::jags.samples()</code> function to represent MCMC
output from a <code>JAGS</code> model.

Implements a wide range of dose escalation
designs. The focus is on model-based designs, ranging from classical and
modern continual reassessment methods (CRMs) based on dose-limiting toxicity
endpoints to dual-endpoint designs taking into account a biomarker/efficacy
outcome. Bayesian inference is performed via MCMC sampling in JAGS, and it is easy
to setup a new design with custom JAGS code. However, it is also possible to
implement 3+3 designs for comparison or models with non-Bayesian estimation.
The whole package is written in a modular form in the S4 class system, making it
very flexible for adaptation to new models, escalation or stopping rules.
Further details are presented in
Sabanes Bove et al. (2019) <doi:10.18637/jss.v089.i10>.

Daniel Sabanes Bove

crmPack

Object-Oriented Implementation of Dose Escalation Designs

Wai Yin Yeung

Burak Kuersad Guenhan

Giuseppe Palermo

Thomas Jaki

Jiawen Zhu

Ziwei Liao

Dimitris Kontos

Marlene Schulte-Goebel

Doug Kelkhoff

Oliver Boix

Robert Adams

Clara Beck

John Kirkpatrick

Wojciech Wójciak

Guanya Peng

Prerana Chandratre

F. Hoffmann-La Roche AG 

Merck Healthcare KGaA 

Bayer AG 

RPACT GmbH 

h_jags_extract_samples function

<dl><dt>x</dt>
<dd>an <code>rjags::mcarray.object</code> object.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#stable'><img src='figures/lifecycle-stable.svg' alt='[Stable]' /></a>
A simple helper function that extracts a sample from
<code>rjags::mcarray.object</code> S3 class object. The <code>rjags::mcarray.object</code>
object is used by the <code>rjags::jags.samples()</code> function to represent MCMC
output from a <code>JAGS</code> model.

Extracting Samples from JAGS mcarray Object — h_jags_extract_samples

<dl>

<dt>x</dt>
<dd>an <code>rjags::mcarray.object</code> object.</dd>

</dl>

Extracting Samples from <code>JAGS</code> <code>mcarray</code> Object

h_jags_extract_samples: Extracting Samples from `JAGS` `mcarray` Object

Description

Usage

Arguments