armSamples

armSamples,HierarchicalSamples,character-method

<a href="https://lifecycle.r-lib.org/articles/stages.html#experimental"><img src="figures/lifecycle-experimental.svg?package=crmPack&version=2.2.1" alt="[Experimental]"></a>
Returns a plain <code>Samples</code> object for a single hierarchical arm, with the
original arm-level parameter names restored.

Implements a wide range of dose escalation
designs. The focus is on model-based designs, ranging from classical and
modern continual reassessment methods (CRMs) based on dose-limiting toxicity
endpoints to dual-endpoint designs taking into account a biomarker/efficacy
outcome. Bayesian inference is performed via MCMC sampling in JAGS, and it is easy
to setup a new design with custom JAGS code. However, it is also possible to
implement 3+3 designs for comparison or models with non-Bayesian estimation.
The whole package is written in a modular form in the S4 class system, making it
very flexible for adaptation to new models, escalation or stopping rules.
Further details are presented in
Sabanés Bové et al. (2019) <doi:10.18637/jss.v089.i10>.

Daniel Sabanes Bove

crmPack

Object-Oriented Implementation of Dose Escalation Designs

Daniel Sabanés Bové

Wai Yin Yeung

Burak Kuersad Guenhan

Giuseppe Palermo

Thomas Jaki

Jiawen Zhu

Ziwei Liao

Dimitris Kontos

Marlene Schulte-Goebel

Doug Kelkhoff

Oliver Boix

Robert Adams

Clara Beck

John Kirkpatrick

Wojciech Wójciak

Guanya Peng

Prerana Chandratre

F. Hoffmann-La Roche AG 

Merck Healthcare KGaA 

Bayer AG 

RPACT GmbH 

armSamples function

<dl><dt>object</dt>
<dd>(<code>HierarchicalSamples</code>) hierarchical posterior draws.</dd>
<dt>arm</dt>
<dd>(<code>character</code>) name of the arm to extract.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#experimental'><img src='figures/lifecycle-experimental.svg' alt='[Experimental]' /></a>
Returns a plain <code>Samples</code> object for a single hierarchical arm, with the
original arm-level parameter names restored.

Extract One Arm's Posterior Draws from a HierarchicalSamples Object — armSamples

<dl>

<dt>object</dt>
<dd>(<code>HierarchicalSamples</code>) hierarchical posterior draws.</dd>


<dt>arm</dt>
<dd>(<code>character</code>) name of the arm to extract.</dd>

</dl>

Extract One Arm's Posterior Draws from a <code>HierarchicalSamples</code> Object

armSamples: Extract One Arm's Posterior Draws from a `HierarchicalSamples` Object

Description

Usage

Value

Arguments