<p>A pairwise R^2 linkage matrix generated by PLINK for example cqProt-003 soy data</p>

datasets

A local haplotyping visualization toolbox to capture major patterns
of co-inheritance between clusters of linked variants, whilst connecting findings
to phenotypic and demographic traits across individuals. 'crosshap' enables users
to explore and understand genomic variation across a trait-associated region.
For an example of successful local haplotype analysis, see Marsh et al. (2022)
<doi:10.1007/s00122-022-04045-8>.

Jacob Marsh

crosshap

Local Haplotype Clustering and Visualization

Brady Johnston

Jakob Petereit

LD function

<p>A square matrix read in by read_LD()</p>

LD: Example LD matrix

Description

Usage

Arguments

Format