crosshap

crosshap-package

A local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. 'crosshap' enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) tools:::Rd_expr_doi("10.1007/s00122-022-04045-8").

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A local haplotyping visualization toolbox to capture major patterns
of co-inheritance between clusters of linked variants, whilst connecting findings
to phenotypic and demographic traits across individuals. 'crosshap' enables users
to explore and understand genomic variation across a trait-associated region.
For an example of successful local haplotype analysis, see Marsh et al. (2022)
<doi:10.1007/s00122-022-04045-8>.

Jacob Marsh

Local Haplotype Clustering and Visualization

Brady Johnston

Jakob Petereit

crosshap-package function

Maintainer: Jacob Marsh <a href="/link/jake.marsh%40live.com.au?package=crosshap&version=1.4.0" data-mini-rdoc="crosshap::jake.marsh@live.com.au">jake.marsh@live.com.au</a> (<a href="https://orcid.org/0000-0003-3734-2023">ORCID</a>)
Authors:<ul>
<li>Brady Johnston <a href="/link/brady.johnston%40me.com?package=crosshap&version=1.4.0" data-mini-rdoc="crosshap::brady.johnston@me.com">brady.johnston@me.com</a> (<a href="https://orcid.org/0000-0001-6301-2269">ORCID</a>)</li>
<li>Jakob Petereit <a href="/link/petinho86%40gmail.com?package=crosshap&version=1.4.0" data-mini-rdoc="crosshap::petinho86@gmail.com">petinho86@gmail.com</a> (<a href="https://orcid.org/0000-0003-2159-0380">ORCID</a>)</li>
</ul>

Author

crosshap: Local Haplotype Clustering and Visualization — crosshap-package

Maintainer: Jacob Marsh <a href='mailto:jake.marsh@live.com.au'>jake.marsh@live.com.au</a> (<a href='https://orcid.org/0000-0003-3734-2023'>ORCID</a>)
Authors:<ul>
<li>Brady Johnston <a href='mailto:brady.johnston@me.com'>brady.johnston@me.com</a> (<a href='https://orcid.org/0000-0001-6301-2269'>ORCID</a>)</li>
<li>Jakob Petereit <a href='mailto:petinho86@gmail.com'>petinho86@gmail.com</a> (<a href='https://orcid.org/0000-0003-2159-0380'>ORCID</a>)</li>
</ul>

crosshap-package: crosshap: Local Haplotype Clustering and Visualization

Description

Arguments

Author

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