read_LD

If your correlation matrix does not have rownames and column names, a VCF
will need to be provided so it can be added with read_LD().

A local haplotyping visualization toolbox to capture major patterns
of co-inheritance between clusters of linked variants, whilst connecting findings
to phenotypic and demographic traits across individuals. 'crosshap' enables users
to explore and understand genomic variation across a trait-associated region.
For an example of successful local haplotype analysis, see Marsh et al. (2022)
<doi:10.1007/s00122-022-04045-8>.

Jacob Marsh

crosshap

Local Haplotype Clustering and Visualization

Brady Johnston

Jakob Petereit

read_LD function

<dl><dt>LDin</dt>
<dd>Square correlation matrix</dd>
<dt>vcf</dt>
<dd>VCF object created by read_vcf() that can be used to assign column names</dd></dl>

Arguments

Read LD correlation matrix to tibble — read_LD

<dl>

<dt>LDin</dt>
<dd>Square correlation matrix</dd>


<dt>vcf</dt>
<dd>VCF object created by read_vcf() that can be used to assign column names</dd>

</dl>

read_LD: Read LD correlation matrix to tibble

Description

Usage

Value

Arguments