read_vcf

Dashes,'-', in individual names are recoded to '.' for downstream
compatability.

A local haplotyping visualization toolbox to capture major patterns
of co-inheritance between clusters of linked variants, whilst connecting findings
to phenotypic and demographic traits across individuals. 'crosshap' enables users
to explore and understand genomic variation across a trait-associated region.
For an example of successful local haplotype analysis, see Marsh et al. (2022)
<doi:10.1007/s00122-022-04045-8>.

Jacob Marsh

crosshap

Local Haplotype Clustering and Visualization

Brady Johnston

Jakob Petereit

read_vcf function

<dl><dt>VCFin</dt>
<dd>Input VCF</dd></dl>

Arguments

Read VCF to tibble — read_vcf

<dl>

<dt>VCFin</dt>
<dd>Input VCF</dd>

</dl>

read_vcf: Read VCF to tibble

Description

Usage

Value

Arguments