calc_np

calculate network potential for one node.

Provides a general toolkit for drug target identification. We include functionality to reduce large graphs to subgraphs and prioritize nodes. In addition to being optimized for use with generic graphs, we also provides support to analyze protein-protein interactions networks from online repositories. For more details on core method, refer to Weaver et al. (2021) <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008755>.

Davis Weaver

crosstalkr

Analysis of Graph-Structured Data with a Focus on
Protein-Protein Interaction Networks

calc_np function

<dl><dt>c_i</dt>
<dd>expression for a given node.</dd>
<dt>c_j</dt>
<dd>vector of expressions for each neighbor of c_i</dd></dl>

Arguments

calculate network potential for one node. — calc_np

<dl>

<dt>c_i</dt>
<dd>expression for a given node.</dd>


<dt>c_j</dt>
<dd>vector of expressions for each neighbor of c_i</dd>

</dl>

calc_np: calculate network potential for one node.

Description

Usage

Arguments