Learn R Programming

crosstalkr (version 1.0.4)

calc_np_all_legacy: function to calculate the network potential for each protein in a user-provided vector

Description

Mostly just used to help debug the CPP version - not exported

Usage

calc_np_all_legacy(
  exp,
  g,
  v = as.character(names(igraph::V(g))),
  neighbors = NULL
)

Value

dataframe containing network potential for each of the inputed gene names.

Arguments

exp

expression vector - assumed to be a named vector where the values are expression and the names are the gene name

g

igraph object - will be filtered so that only nodes found in both exp and g are kept

v

character vector of nodes over which to calculate network potential.

neighbors

named list containing the neighbors for each node of graph g. If not provided, it will be computed