crosstalkr (version 1.0.4)

crosstalk_subgraph: Helper function to generate subgraph from crosstalk_df output of compute_crosstalk

Description

Useful if the user wants to carry out further analysis or design custom visualizations.

Usage

crosstalk_subgraph(crosstalk_df, g, seed_proteins, tg = TRUE)

Value

a tidygraph structure containing information about the crosstalkr subgraph

Arguments

crosstalk_df

a dataframe containing the results of compute_crosstalk

g

igraph network object.

seed_proteins

user defined seed proteins

tg

bool do we want to tidy the graph for plotting?

Examples

if (FALSE) {
ct_df <- compute_crosstalk(c("EGFR", "KRAS"))
g <- prep_biogrid()
crosstalk_subgraph(ct_df, g = g, seed_proteins = c("EGFR", "KRAS"))
}