fcalc_np_all

Function to calculate the network potential for vertices v

Provides a general toolkit for drug target identification. We include functionality to reduce large graphs to subgraphs and prioritize nodes. In addition to being optimized for use with generic graphs, we also provides support to analyze protein-protein interactions networks from online repositories. For more details on core method, refer to Weaver et al. (2021) <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008755>.

Davis Weaver

crosstalkr

Analysis of Graph-Structured Data with a Focus on
Protein-Protein Interaction Networks

fcalc_np_all function

<dl><dt>neighbors</dt>
<dd>list of neighbors for every node in the graph, type Rcpp::list</dd>
<dt>vertices</dt>
<dd>node list for graph, type Rcpp::StringVector</dd>
<dt>v</dt>
<dd>list of nodes for which we plan to calculate network potential</dd>
<dt>exp</dt>
<dd>named vector of expression for each node in vertices</dd></dl>

Arguments

Function to calculate the network potential for vertices v — fcalc_np_all

<dl>

<dt>neighbors</dt>
<dd>list of neighbors for every node in the graph, type Rcpp::list</dd>


<dt>vertices</dt>
<dd>node list for graph, type Rcpp::StringVector</dd>


<dt>v</dt>
<dd>list of nodes for which we plan to calculate network potential</dd>


<dt>exp</dt>
<dd>named vector of expression for each node in vertices</dd>

</dl>

fcalc_np_all: Function to calculate the network potential for vertices v

Description

Usage

Arguments