get_neighbors

just a wrapper around <code><a href="/link/igraph%3A%3Aneighbors()?package=crosstalkr&version=1.0.4" data-mini-rdoc="crosstalkr::igraph::neighbors()">igraph::neighbors()</a></code> for convenience

Provides a general toolkit for drug target identification. We include functionality to reduce large graphs to subgraphs and prioritize nodes. In addition to being optimized for use with generic graphs, we also provides support to analyze protein-protein interactions networks from online repositories. For more details on core method, refer to Weaver et al. (2021) <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008755>.

Davis Weaver

crosstalkr

Analysis of Graph-Structured Data with a Focus on
Protein-Protein Interaction Networks

get_neighbors function

<dl><dt>gene</dt>
<dd>gene to grab neighbors from.</dd>
<dt>g</dt>
<dd>igraph object - will be filtered so that only nodes found in both exp and g are kept</dd></dl>

Arguments

just a wrapper around <code><a href='https://rdrr.io/pkg/igraph/man/neighbors.html'>igraph::neighbors()</a></code> for convenience

function to get graph neighbors (along with their expression values) for a given gene in a given network g — get_neighbors

<dl>

<dt>gene</dt>
<dd>gene to grab neighbors from.</dd>


<dt>g</dt>
<dd>igraph object - will be filtered so that only nodes found in both exp and g are kept</dd>

</dl>

get_neighbors: function to get graph neighbors (along with their expression values) for a given gene in a given network g

Description

Usage

Value

Arguments