gfilter.igraph_method

Method to filter graph based on any igraph method that scores verticies.

Provides a general toolkit for drug target identification. We include functionality to reduce large graphs to subgraphs and prioritize nodes. In addition to being optimized for use with generic graphs, we also provides support to analyze protein-protein interactions networks from online repositories. For more details on core method, refer to Weaver et al. (2021) <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008755>.

Davis Weaver

crosstalkr

Analysis of Graph-Structured Data with a Focus on
Protein-Protein Interaction Networks

gfilter.igraph_method function

<dl><dt>g</dt>
<dd>igraph object</dd>
<dt>use_ppi</dt>
<dd>bool - should we use a ppi from online repository?</dd>
<dt>method</dt>
<dd>str</dd>
<dt>n</dt>
<dd>int - number of nodes to include in the returned subgraph</dd>
<dt>desc</dt>
<dd>bool - do we want the top or bottom examples of the provided metric</dd>
<dt>val_name</dt>
<dd>str</dd>
<dt>...</dt>
<dd>additional parameters passed to load_ppi</dd></dl>

Arguments

Method to filter graph based on any igraph method that scores verticies. — gfilter.igraph_method

<dl>

<dt>g</dt>
<dd>igraph object</dd>


<dt>use_ppi</dt>
<dd>bool - should we use a ppi from online repository?</dd>


<dt>method</dt>
<dd>str</dd>


<dt>n</dt>
<dd>int - number of nodes to include in the returned subgraph</dd>


<dt>desc</dt>
<dd>bool - do we want the top or bottom examples of the provided metric</dd>


<dt>val_name</dt>
<dd>str</dd>


<dt>...</dt>
<dd>additional parameters passed to load_ppi</dd>

</dl>

gfilter.igraph_method: Method to filter graph based on any igraph method that scores verticies.

Description

Usage

Value

Arguments