load_ppi

Helper function to load requested PPI w/ parameters

Provides a general toolkit for drug target identification. We include functionality to reduce large graphs to subgraphs and prioritize nodes. In addition to being optimized for use with generic graphs, we also provides support to analyze protein-protein interactions networks from online repositories. For more details on core method, refer to Weaver et al. (2021) <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008755>.

Davis Weaver

crosstalkr

Analysis of Graph-Structured Data with a Focus on
Protein-Protein Interaction Networks

load_ppi function

<dl><dt>cache</dt>
<dd>A filepath to a folder downloaded files should be stored</dd>
<dt>union</dt>
<dd>bool</dd>
<dt>intersection</dt>
<dd>bool</dd>
<dt>species</dt>
<dd>species code either using latin species name or taxon id</dd>
<dt>min_score</dt>
<dd>minimum connectivity score for each edge in the network.</dd>
<dt>ppi</dt>
<dd>str</dd></dl>

Arguments

Helper function to load requested PPI w/ parameters — load_ppi

<dl>

<dt>cache</dt>
<dd>A filepath to a folder downloaded files should be stored</dd>


<dt>union</dt>
<dd>bool</dd>


<dt>intersection</dt>
<dd>bool</dd>


<dt>species</dt>
<dd>species code either using latin species name or taxon id</dd>


<dt>min_score</dt>
<dd>minimum connectivity score for each edge in the network.</dd>


<dt>ppi</dt>
<dd>str</dd>

</dl>

load_ppi: Helper function to load requested PPI w/ parameters

Description

Usage

Value

Arguments