crso (version 0.1.1)

evaluateListOfIMs: Evaluate list of rule set matrices

Description

Evaluate list of rule set matrices

Usage

evaluateListOfIMs(D, Q, rm, im.list)

Arguments

D

binary matrix of events by samples

Q

penalty matrix of events by samples

rm

matrix of rules ordered by phase one

im.list

list of rule set matrices

Value

list of Js for each rule set matrix

Examples

# NOT RUN {
library(crso)
data(skcm)
list2env(skcm.list,envir=globalenv())
Q <- log10(P)
rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71
p2.im.list <- makePhaseTwoImList(D,Q,rm.full,k.max = 3,pool.sizes=c(60,20,20),max.stored=100,
              shouldPrint = TRUE)
p2.performance.list <- evaluateListOfIMs(D,Q,rm.full,p2.im.list)
# }