crso (version 0.1.1)

getCoreK: Determine core K from phase 3 tpl and til

Description

Determine core K from phase 3 tpl and til

Usage

getCoreK(D, rm, tpl, til, cov.thresh, perf.thresh)

Arguments

D

input matrix D

rm

binary rule matrix

tpl

list of top performances

til

list of top rule set index matrices

cov.thresh

core coverage threshold, defaults is 95

perf.thresh

core performance threshold, default is 90

Examples

# NOT RUN {
library(crso)
data(skcm)
list2env(skcm.list,envir=globalenv())
Q <- log10(P)
rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71
til.p2 <- makePhaseTwoImList(D,Q,rm.full,k.max = 3,pool.sizes=c(60,20,20),
          max.stored=100,shouldPrint = FALSE)
tpl.p2 <- evaluateListOfIMs(D,Q,rm.full,til.p2)
core.K <- getCoreK(D,rm.full,tpl.p2,til.p2)
# core.K should be 3 almost always for this example, can run a few time to confirm
# }